IL_6GB2_025
3D structure
- PDB id
- 6GB2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUAACU*AUAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GB2_025 not in the Motif Atlas
- Homologous match to IL_7RQB_051
- Geometric discrepancy: 0.4804
- The information below is about IL_7RQB_051
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.6
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 14
Unit IDs
6GB2|1|BA|G|682
6GB2|1|BA|U|683
6GB2|1|BA|A|684
6GB2|1|BA|A|685
6GB2|1|BA|C|686
6GB2|1|BA|U|687
*
6GB2|1|BA|A|694
6GB2|1|BA|U|695
6GB2|1|BA|A|696
6GB2|1|BA|C|697
Current chains
- Chain BA
- 16S ribosomal RNA, mitochondrial
Nearby chains
- Chain BW
- Mitochondrial ribosomal protein L22
- Chain BX
- Mitochondrial ribosomal protein L23
- Chain Bi
- Mitochondrial ribosomal protein L45
- Chain Bw
- mL65, MRPS30
Coloring options: