IL_6GB2_030

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GB2_030 not in the Motif Atlas

Geometric match to IL_7RQB_066

Geometric discrepancy: 0.0658

The information below is about IL_7RQB_066

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

6GB2|1|BA|G|801
6GB2|1|BA|G|802
6GB2|1|BA|A|803
6GB2|1|BA|A|804
*
6GB2|1|BA|U|988
6GB2|1|BA|C|989

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain BE

ICT1

Chain BO

Mitochondrial ribosomal protein L14

Chain BT

Mitochondrial ribosomal protein L19