IL_6GB2_031
3D structure
- PDB id
- 6GB2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- ACUCGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 6GB2|1|BA|G|987
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GB2_031 not in the Motif Atlas
- Geometric match to IL_4WF9_065
- Geometric discrepancy: 0.0724
- The information below is about IL_4WF9_065
- Detailed Annotation
- Intercalated tWH
- Broad Annotation
- Intercalated tWH
- Motif group
- IL_28217.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 10
Unit IDs
6GB2|1|BA|A|804
6GB2|1|BA|C|805
6GB2|1|BA|U|806
6GB2|1|BA|C|807
6GB2|1|BA|G|808
6GB2|1|BA|G|809
*
6GB2|1|BA|C|985
6GB2|1|BA|U|986
6GB2|1|BA|G|987
6GB2|1|BA|U|988
Current chains
- Chain BA
- 16S ribosomal RNA, mitochondrial
Nearby chains
- Chain BE
- ICT1
- Chain BO
- Mitochondrial ribosomal protein L14
- Chain BT
- Mitochondrial ribosomal protein L19
Coloring options: