IL_6GB2_034

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

6GB2|1|BA|C|881

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GB2_034 not in the Motif Atlas

Homologous match to IL_5J7L_314

Geometric discrepancy: 0.0876

The information below is about IL_5J7L_314

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

6GB2|1|BA|C|880
6GB2|1|BA|C|881
6GB2|1|BA|A|882
6GB2|1|BA|G|883
*
6GB2|1|BA|C|898
6GB2|1|BA|G|899

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain BD

Mitochondrial ribosomal protein L2