IL_6GB2_057

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAAC*GCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GB2_057 not in the Motif Atlas

Geometric match to IL_7RQB_051

Geometric discrepancy: 0.1389

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

6GB2|1|BA|C|1483
6GB2|1|BA|C|1484
6GB2|1|BA|A|1485
6GB2|1|BA|A|1486
6GB2|1|BA|C|1487
*
6GB2|1|BA|G|1497
6GB2|1|BA|C|1498
6GB2|1|BA|G|1499

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain BE

ICT1

Chain BO

Mitochondrial ribosomal protein L14

Chain BT

Mitochondrial ribosomal protein L19