IL_6GB2_059

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUAAU*AUUAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GB2_059 not in the Motif Atlas

Geometric match to IL_4QLM_002

Geometric discrepancy: 0.3531

The information below is about IL_4QLM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74322.2

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

6GB2|1|BA|G|1507
6GB2|1|BA|A|1508
6GB2|1|BA|U|1509
6GB2|1|BA|A|1510
6GB2|1|BA|A|1511
6GB2|1|BA|U|1512
*
6GB2|1|BA|A|1534
6GB2|1|BA|U|1535
6GB2|1|BA|U|1536
6GB2|1|BA|A|1537
6GB2|1|BA|A|1538
6GB2|1|BA|C|1539

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain B9

Ribosomal protein

Chain BN

Mitochondrial ribosomal protein L13

Chain Bx

Mitochondrial ribosomal protein S18A