IL_6GC0_015

3D structure

PDB id

6GC0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6GC0|1|A|G|801, 6GC0|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC0_015 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.1493

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6GC0|1|A|G|674
6GC0|1|A|A|675
6GC0|1|A|A|676
6GC0|1|A|A|677
6GC0|1|A|C|678
*
6GC0|1|A|G|799
6GC0|1|A|A|800
6GC0|1|A|G|801
6GC0|1|A|A|802
6GC0|1|A|U|803
6GC0|1|A|A|804
6GC0|1|A|G|805
6GC0|1|A|C|806

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15