IL_6GC0_042

3D structure

PDB id

6GC0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6GC0|1|A|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC0_042 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1455

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6GC0|1|A|C|1208
6GC0|1|A|U|1209
6GC0|1|A|G|1210
6GC0|1|A|C|1211
6GC0|1|A|G|1212
6GC0|1|A|A|1213
6GC0|1|A|A|1214
6GC0|1|A|G|1215
*
6GC0|1|A|U|1234
6GC0|1|A|G|1235
6GC0|1|A|G|1236
6GC0|1|A|A|1237
6GC0|1|A|G|1238

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L20