IL_6GC0_080

3D structure

PDB id

6GC0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAGG*CCGACCUUGAAAUAC

Length

20 nucleotides

Bulged bases

6GC0|1|A|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC0_080 not in the Motif Atlas

Homologous match to IL_5J7L_329

Geometric discrepancy: 0.327

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

6GC0|1|A|G|2124
6GC0|1|A|G|2125
6GC0|1|A|A|2126
6GC0|1|A|G|2127
6GC0|1|A|G|2128
*
6GC0|1|A|C|2160
6GC0|1|A|C|2161
6GC0|1|A|G|2162
6GC0|1|A|A|2163
6GC0|1|A|C|2164
6GC0|1|A|C|2165
6GC0|1|A|U|2166
6GC0|1|A|U|2167
6GC0|1|A|G|2168
6GC0|1|A|A|2169
6GC0|1|A|A|2170
6GC0|1|A|A|2171
6GC0|1|A|U|2172
6GC0|1|A|A|2173
6GC0|1|A|C|2174

Current chains

Chain A

23S ribosomal RNA

Nearby chains