IL_6GC0_086

3D structure

PDB id

6GC0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC0_086 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.123

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6GC0|1|A|C|2652
6GC0|1|A|U|2653
6GC0|1|A|A|2654
6GC0|1|A|G|2655
6GC0|1|A|U|2656
6GC0|1|A|A|2657
6GC0|1|A|C|2658
*
6GC0|1|A|G|2663
6GC0|1|A|G|2664
6GC0|1|A|A|2665
6GC0|1|A|C|2666
6GC0|1|A|C|2667
6GC0|1|A|G|2668

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6