IL_6GC0_111

3D structure

PDB id

6GC0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAGGU*AUGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC0_111 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.2554

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_06136.2

Basepair signature

cWW-tHS-cWW-tHS-tSH-tSH-cWW

Number of instances in this motif group

6

Unit IDs

6GC0|1|A|U|1720
6GC0|1|A|G|1721
6GC0|1|A|A|1722
6GC0|1|A|G|1723
6GC0|1|A|G|1724
6GC0|1|A|U|1725
*
6GC0|1|A|A|1735
6GC0|1|A|U|1736
6GC0|1|A|G|1737
6GC0|1|A|G|1738
6GC0|1|A|A|1739
6GC0|1|A|G|1740

Current chains

Chain A

23S ribosomal RNA

Nearby chains