3D structure

PDB id
6GC0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
50S ribosomal subunit assembly intermediate state 4
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GGAAG*CCC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6GC0_113 not in the Motif Atlas
Geometric match to IL_6CZR_361
Geometric discrepancy: 0.3029
The information below is about IL_6CZR_361
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_56539.1
Basepair signature
cWW-cWW-cSH-cWW-L
Number of instances in this motif group
4

Unit IDs

6GC0|1|A|G|1845
6GC0|1|A|G|1846
6GC0|1|A|A|1847
6GC0|1|A|A|1848
6GC0|1|A|G|1849
*
6GC0|1|A|C|1893
6GC0|1|A|C|1894
6GC0|1|A|C|1895

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L2

Coloring options:


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