IL_6GC7_065

3D structure

PDB id

6GC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GCAG*CUGAC

Length

9 nucleotides

Bulged bases

6GC7|1|A|A|443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC7_065 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.2986

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

6GC7|1|A|G|36
6GC7|1|A|C|37
6GC7|1|A|A|38
6GC7|1|A|G|39
*
6GC7|1|A|C|440
6GC7|1|A|U|441
6GC7|1|A|G|442
6GC7|1|A|A|443
6GC7|1|A|C|444

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain Q

50S ribosomal protein L20