IL_6GC8_036

3D structure

PDB id

6GC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate - 50S rec*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC8_036 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.1787

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6GC8|1|A|U|1018
6GC8|1|A|U|1019
6GC8|1|A|A|1020
6GC8|1|A|A|1021
6GC8|1|A|G|1022
6GC8|1|A|U|1023
6GC8|1|A|G|1024
*
6GC8|1|A|C|1140
6GC8|1|A|U|1141
6GC8|1|A|A|1142
6GC8|1|A|A|1143
6GC8|1|A|A|1144

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13