IL_6GC8_121

3D structure

PDB id

6GC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate - 50S rec*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCGAGGC*GCGUAGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC8_121 not in the Motif Atlas

Geometric match to IL_3NDB_008

Geometric discrepancy: 0.3367

The information below is about IL_3NDB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65851.3

Basepair signature

cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

Number of instances in this motif group

2

Unit IDs

6GC8|1|A|G|1356
6GC8|1|A|C|1357
6GC8|1|A|G|1358
6GC8|1|A|A|1359
6GC8|1|A|G|1360
6GC8|1|A|G|1361
6GC8|1|A|C|1362
*
6GC8|1|A|G|1369
6GC8|1|A|C|1370
6GC8|1|A|G|1371
6GC8|1|A|U|1372
6GC8|1|A|A|1373
6GC8|1|A|G|1374
6GC8|1|A|U|1375

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2

Chain X

50S ribosomal protein L28