IL_6GC8_131

3D structure

PDB id

6GC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate - 50S rec*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUAGC*GCGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC8_131 not in the Motif Atlas

Geometric match to IL_5J7L_063

Geometric discrepancy: 0.2955

The information below is about IL_5J7L_063

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_80231.1

Basepair signature

cWW-L-R-L-R-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

6GC8|1|A|U|1864
6GC8|1|A|U|1865
6GC8|1|A|A|1866
6GC8|1|A|G|1867
6GC8|1|A|C|1868
*
6GC8|1|A|G|1873
6GC8|1|A|C|1874
6GC8|1|A|G|1875
6GC8|1|A|A|1876
6GC8|1|A|A|1877
6GC8|1|A|G|1878

Current chains

Chain A

23S ribosomal RNA

Nearby chains