IL_6GQ1_019
3D structure
- PDB id
- 6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- GAAUGUAG*UAUUAUAGC
- Length
- 17 nucleotides
- Bulged bases
- 6GQ1|1|1|U|534, 6GQ1|1|1|U|558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GQ1_019 not in the Motif Atlas
- Homologous match to IL_5TBW_020
- Geometric discrepancy: 0.1911
- The information below is about IL_5TBW_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07703.1
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6GQ1|1|1|G|531
6GQ1|1|1|A|532
6GQ1|1|1|A|533
6GQ1|1|1|U|534
6GQ1|1|1|G|535
6GQ1|1|1|U|536
6GQ1|1|1|A|537
6GQ1|1|1|G|538
*
6GQ1|1|1|U|553
6GQ1|1|1|A|554
6GQ1|1|1|U|555
6GQ1|1|1|U|556
6GQ1|1|1|A|557
6GQ1|1|1|U|558
6GQ1|1|1|A|559
6GQ1|1|1|G|560
6GQ1|1|1|C|561
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain M
- 60S ribosomal protein L14-A
- Chain S
- 60S ribosomal protein L20-A
Coloring options: