IL_6GQ1_065

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

UCUUC*GGAAUA

Length

11 nucleotides

Bulged bases

6GQ1|1|1|U|1629

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQ1_065 not in the Motif Atlas

Homologous match to IL_8C3A_072

Geometric discrepancy: 0.3078

The information below is about IL_8C3A_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48431.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6GQ1|1|1|U|1627
6GQ1|1|1|C|1628
6GQ1|1|1|U|1629
6GQ1|1|1|U|1630
6GQ1|1|1|C|1631
*
6GQ1|1|1|G|1811
6GQ1|1|1|G|1812
6GQ1|1|1|A|1813
6GQ1|1|1|A|1814
6GQ1|1|1|U|1815
6GQ1|1|1|A|1816

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain Z

60S ribosomal protein L27-A