IL_6GQ1_143

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

UAUAAGC*GUGAAA

Length

13 nucleotides

Bulged bases

6GQ1|1|2|U|66, 6GQ1|1|2|A|68

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQ1_143 not in the Motif Atlas

Geometric match to IL_5J7L_063

Geometric discrepancy: 0.3583

The information below is about IL_5J7L_063

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_80231.1

Basepair signature

cWW-L-R-L-R-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

6GQ1|1|2|U|64
6GQ1|1|2|A|65
6GQ1|1|2|U|66
6GQ1|1|2|A|67
6GQ1|1|2|A|68
6GQ1|1|2|G|69
6GQ1|1|2|C|70
*
6GQ1|1|2|G|81
6GQ1|1|2|U|82
6GQ1|1|2|G|83
6GQ1|1|2|A|84
6GQ1|1|2|A|85
6GQ1|1|2|A|86

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AO

40S ribosomal protein S24-A

Chain w

40S ribosomal protein S6-A