IL_6GQ1_155

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

6GQ1|1|2|U|313, 6GQ1|1|2|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQ1_155 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.2164

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6GQ1|1|2|U|311
6GQ1|1|2|A|312
6GQ1|1|2|U|313
6GQ1|1|2|C|314
6GQ1|1|2|A|315
6GQ1|1|2|A|316
*
6GQ1|1|2|U|348
6GQ1|1|2|U|349
6GQ1|1|2|U|350
6GQ1|1|2|C|351
6GQ1|1|2|A|352
6GQ1|1|2|A|353
6GQ1|1|2|C|354
6GQ1|1|2|G|355

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AB

40S ribosomal protein S11-A

Chain AN

40S ribosomal protein S23-A

Chain y

40S ribosomal protein S8-A