IL_6GQ1_184
3D structure
- PDB id
- 6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- GUAU*AGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GQ1_184 not in the Motif Atlas
- Homologous match to IL_4V88_432
- Geometric discrepancy: 0.142
- The information below is about IL_4V88_432
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
6GQ1|1|2|G|885
6GQ1|1|2|U|886
6GQ1|1|2|A|887
6GQ1|1|2|U|888
*
6GQ1|1|2|A|924
6GQ1|1|2|G|925
6GQ1|1|2|A|926
6GQ1|1|2|C|927
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain AE
- 40S ribosomal protein S14-B
- Chain AQ
- 40S ribosomal protein S26-B
- Chain p
- 60S ribosomal protein L43-A
- Chain r
- 40S ribosomal protein S1-A
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