3D structure

PDB id
6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.4 Å

Loop

Sequence
CGAAG*CGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6GQ1_187 not in the Motif Atlas
Homologous match to IL_4V88_436
Geometric discrepancy: 0.347
The information below is about IL_4V88_436
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.4
Basepair signature
cWW-R-L-tHS-tHW-cWW
Number of instances in this motif group
18

Unit IDs

6GQ1|1|2|C|990
6GQ1|1|2|G|991
6GQ1|1|2|A|992
6GQ1|1|2|A|993
6GQ1|1|2|G|994
*
6GQ1|1|2|C|1010
6GQ1|1|2|G|1011
6GQ1|1|2|U|1012
6GQ1|1|2|A|1013
6GQ1|1|2|G|1014

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain A
60S ribosomal protein L2-A
Chain AE
40S ribosomal protein S14-B
Chain AQ
40S ribosomal protein S26-B

Coloring options:


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