IL_6GQ1_266

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQ1_266 not in the Motif Atlas

Homologous match to IL_8P9A_428

Geometric discrepancy: 0.1863

The information below is about IL_8P9A_428

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

6GQ1|1|2|G|1111
6GQ1|1|2|G|1112
6GQ1|1|2|A|1113
6GQ1|1|2|G|1114
6GQ1|1|2|U|1115
6GQ1|1|2|A|1116
6GQ1|1|2|U|1117
6GQ1|1|2|G|1118
*
6GQ1|1|2|U|1129
6GQ1|1|2|G|1130
6GQ1|1|2|A|1131
6GQ1|1|2|A|1132
6GQ1|1|2|A|1133
6GQ1|1|2|C|1134

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AN

40S ribosomal protein S23-A

Chain n

60S ribosomal protein L41-B