IL_6GQB_052
3D structure
- PDB id
- 6GQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 6GQB|1|1|C|1196, 6GQB|1|1|A|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GQB_052 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.1172
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6GQB|1|1|G|1194
6GQB|1|1|A|1195
6GQB|1|1|C|1196
6GQB|1|1|A|1197
6GQB|1|1|C|1198
6GQB|1|1|C|1199
6GQB|1|1|A|1200
6GQB|1|1|C|1201
6GQB|1|1|A|1202
6GQB|1|1|A|1203
6GQB|1|1|A|1204
6GQB|1|1|A|1205
*
6GQB|1|1|U|1299
6GQB|1|1|G|1300
6GQB|1|1|A|1301
6GQB|1|1|A|1302
6GQB|1|1|A|1303
6GQB|1|1|A|1304
6GQB|1|1|U|1305
6GQB|1|1|G|1306
6GQB|1|1|G|1307
6GQB|1|1|A|1308
6GQB|1|1|U|1309
6GQB|1|1|G|1310
6GQB|1|1|G|1311
6GQB|1|1|C|1312
6GQB|1|1|G|1313
6GQB|1|1|C|1314
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain B
- 60S ribosomal protein L3
- Chain F
- 60S ribosomal protein L7-A
- Chain I
- 60S ribosomal protein L10
- Chain O
- 60S ribosomal protein L16-A
- Chain S
- 60S ribosomal protein L20-A
- Chain f
- 60S ribosomal protein L33-A
- Chain m
- Ubiquitin-60S ribosomal protein L40
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