IL_6GQB_056

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6GQB|1|1|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQB_056 not in the Motif Atlas

Geometric match to IL_6CZR_136

Geometric discrepancy: 0.2352

The information below is about IL_6CZR_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05564.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

6GQB|1|1|G|1262
6GQB|1|1|A|1263
6GQB|1|1|G|1264
6GQB|1|1|U|1265
6GQB|1|1|G|1266
*
6GQB|1|1|C|1275
6GQB|1|1|U|1276
6GQB|1|1|C|1277

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain P0

60S acidic ribosomal protein P0

Chain P2

60S ribosomal protein L12-A

Chain m

Ubiquitin-60S ribosomal protein L40