IL_6GQB_080

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

6GQB|1|1|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQB_080 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.1441

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6GQB|1|1|C|1918
6GQB|1|1|G|1919
6GQB|1|1|U|1920
6GQB|1|1|A|1921
6GQB|1|1|A|1922
6GQB|1|1|C|1923
*
6GQB|1|1|G|1928
6GQB|1|1|G|1929
6GQB|1|1|A|1930
6GQB|1|1|U|1931
6GQB|1|1|A|1932
6GQB|1|1|A|1933
6GQB|1|1|G|1934

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain n

60S ribosomal protein L41-B

Chain p

60S ribosomal protein L43-A