IL_6GQB_086

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

6GQB|1|1|A|2242, 6GQB|1|1|A|2243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQB_086 not in the Motif Atlas

Homologous match to IL_8C3A_090

Geometric discrepancy: 0.1802

The information below is about IL_8C3A_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6GQB|1|1|U|2200
6GQB|1|1|G|2201
*
6GQB|1|1|U|2241
6GQB|1|1|A|2242
6GQB|1|1|A|2243
6GQB|1|1|A|2244

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain A

60S ribosomal protein L2-A