IL_6GQB_099

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQB_099 not in the Motif Atlas

Geometric match to IL_5J7L_032

Geometric discrepancy: 0.1912

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6GQB|1|1|G|2450
6GQB|1|1|G|2451
6GQB|1|1|G|2452
*
6GQB|1|1|C|2495
6GQB|1|1|C|2496

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain BA

60S ribosomal protein L1-A