IL_6GQB_123

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

6GQB|1|1|U|3056, 6GQB|1|1|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQB_123 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.1917

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6GQB|1|1|U|3054
6GQB|1|1|U|3055
6GQB|1|1|U|3056
6GQB|1|1|U|3057
6GQB|1|1|U|3058
6GQB|1|1|G|3059
*
6GQB|1|1|C|3084
6GQB|1|1|G|3085
6GQB|1|1|A|3086
6GQB|1|1|A|3087
6GQB|1|1|G|3088

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain W

60S ribosomal protein L24-A

Chain d

60S ribosomal protein L31-A