IL_6GQB_150
3D structure
- PDB id
- 6GQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UAUAAG*UGAAA
- Length
- 11 nucleotides
- Bulged bases
- 6GQB|1|2|U|66, 6GQB|1|2|A|68
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GQB_150 not in the Motif Atlas
- Geometric match to IL_5TBW_118
- Geometric discrepancy: 0.3771
- The information below is about IL_5TBW_118
- Detailed Annotation
- UAA/GAN related
- Broad Annotation
- UAA/GAN related
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
6GQB|1|2|U|64
6GQB|1|2|A|65
6GQB|1|2|U|66
6GQB|1|2|A|67
6GQB|1|2|A|68
6GQB|1|2|G|69
*
6GQB|1|2|U|82
6GQB|1|2|G|83
6GQB|1|2|A|84
6GQB|1|2|A|85
6GQB|1|2|A|86
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AO
- 40S ribosomal protein S24-A
- Chain w
- 40S ribosomal protein S6-A
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