IL_6GQB_154

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAUAAC*GCUAAUA

Length

13 nucleotides

Bulged bases

6GQB|1|2|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQB_154 not in the Motif Atlas

Geometric match to IL_4LFB_009

Geometric discrepancy: 0.2895

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

6GQB|1|2|U|144
6GQB|1|2|A|145
6GQB|1|2|U|146
6GQB|1|2|A|147
6GQB|1|2|A|148
6GQB|1|2|C|149
*
6GQB|1|2|G|165
6GQB|1|2|C|166
6GQB|1|2|U|167
6GQB|1|2|A|168
6GQB|1|2|A|169
6GQB|1|2|U|170
6GQB|1|2|A|171

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AO

40S ribosomal protein S24-A

Chain w

40S ribosomal protein S6-A