IL_6GQB_163

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

6GQB|1|2|U|380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQB_163 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.166

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6GQB|1|2|G|363
6GQB|1|2|G|364
6GQB|1|2|G|365
*
6GQB|1|2|C|376
6GQB|1|2|G|377
6GQB|1|2|A|378
6GQB|1|2|U|379
6GQB|1|2|U|380
6GQB|1|2|C|381

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AN

40S ribosomal protein S23-A

Chain u

40S ribosomal protein S4-A

Chain z

40S ribosomal protein S9-A