IL_6GQB_191

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUCAG*CUUGGAUU

Length

13 nucleotides

Bulged bases

6GQB|1|2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQB_191 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.2057

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6GQB|1|2|G|895
6GQB|1|2|U|896
6GQB|1|2|C|897
6GQB|1|2|A|898
6GQB|1|2|G|899
*
6GQB|1|2|C|910
6GQB|1|2|U|911
6GQB|1|2|U|912
6GQB|1|2|G|913
6GQB|1|2|G|914
6GQB|1|2|A|915
6GQB|1|2|U|916
6GQB|1|2|U|917

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain AE

40S ribosomal protein S14-B

Chain r

40S ribosomal protein S1-A