IL_6GQB_220
3D structure
- PDB id
- 6GQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CCG*CAAG
- Length
- 7 nucleotides
- Bulged bases
- 6GQB|1|2|C|1637, 6GQB|1|2|A|1766
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GQB_220 not in the Motif Atlas
- Geometric match to IL_5J7L_058
- Geometric discrepancy: 0.1466
- The information below is about IL_5J7L_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61438.4
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
6GQB|1|2|C|1636
6GQB|1|2|C|1637
6GQB|1|2|G|1638
*
6GQB|1|2|C|1764
6GQB|1|2|A|1765
6GQB|1|2|A|1766
6GQB|1|2|G|1767
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AE
- 40S ribosomal protein S14-B
- Chain AQ
- 40S ribosomal protein S26-B
- Chain AX
- Transfer RNA; tRNA
- Chain AY
- Messenger RNA
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