IL_6GQB_245
3D structure
- PDB id
- 6GQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUUAAG*CUAUAC
- Length
- 12 nucleotides
- Bulged bases
- 6GQB|1|1|U|1331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GQB_245 not in the Motif Atlas
- Geometric match to IL_8VTW_106
- Geometric discrepancy: 0.2276
- The information below is about IL_8VTW_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.7
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6GQB|1|1|G|1166
6GQB|1|1|U|1167
6GQB|1|1|U|1168
6GQB|1|1|A|1169
6GQB|1|1|A|1170
6GQB|1|1|G|1171
*
6GQB|1|1|C|1328
6GQB|1|1|U|1329
6GQB|1|1|A|1330
6GQB|1|1|U|1331
6GQB|1|1|A|1332
6GQB|1|1|C|1333
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 60S ribosomal protein L7-A
- Chain Q
- 60S ribosomal protein L18-A
- Chain e
- 60S ribosomal protein L32
- Chain f
- 60S ribosomal protein L33-A
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