IL_6GQB_249
3D structure
- PDB id
- 6GQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UCAAAGU*AACCAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GQB_249 not in the Motif Atlas
- Homologous match to IL_8P9A_316
- Geometric discrepancy: 0.2341
- The information below is about IL_8P9A_316
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_88116.2
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6GQB|1|1|U|2211
6GQB|1|1|C|2212
6GQB|1|1|A|2213
6GQB|1|1|A|2214
6GQB|1|1|A|2215
6GQB|1|1|G|2216
6GQB|1|1|U|2217
*
6GQB|1|1|A|2228
6GQB|1|1|A|2229
6GQB|1|1|C|2230
6GQB|1|1|C|2231
6GQB|1|1|A|2232
6GQB|1|1|A|2233
6GQB|1|1|G|2234
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain AX
- Transfer RNA; tRNA
- Chain i
- 60S ribosomal protein L36-A
Coloring options: