IL_6GQV_147

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

6GQV|1|2|U|313, 6GQV|1|2|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQV_147 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.1597

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6GQV|1|2|U|311
6GQV|1|2|A|312
6GQV|1|2|U|313
6GQV|1|2|C|314
6GQV|1|2|A|315
6GQV|1|2|A|316
*
6GQV|1|2|U|348
6GQV|1|2|U|349
6GQV|1|2|U|350
6GQV|1|2|C|351
6GQV|1|2|A|352
6GQV|1|2|A|353
6GQV|1|2|C|354
6GQV|1|2|G|355

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AB

40S ribosomal protein S11-A

Chain AN

40S ribosomal protein S23-A

Chain y

40S ribosomal protein S8-A