IL_6GQV_178
3D structure
- PDB id
- 6GQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GQV_178 not in the Motif Atlas
- Homologous match to IL_4V88_436
- Geometric discrepancy: 0.2144
- The information below is about IL_4V88_436
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
6GQV|1|2|C|990
6GQV|1|2|G|991
6GQV|1|2|A|992
6GQV|1|2|A|993
6GQV|1|2|G|994
*
6GQV|1|2|C|1010
6GQV|1|2|G|1011
6GQV|1|2|U|1012
6GQV|1|2|A|1013
6GQV|1|2|G|1014
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain A
- 60S ribosomal protein L2-A
- Chain AE
- 40S ribosomal protein S14-B
- Chain AQ
- 40S ribosomal protein S26-B
Coloring options: