IL_6GSJ_021
3D structure
- PDB id
- 6GSJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.96 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 6GSJ|1|13|A|532, 6GSJ|1|13|U|534
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GSJ_021 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1428
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6GSJ|1|13|G|515
6GSJ|1|13|U|516
6GSJ|1|13|G|517
6GSJ|1|13|C|518
6GSJ|1|13|C|519
6GSJ|1|13|A|520
6GSJ|1|13|G|521
*
6GSJ|1|13|C|528
6GSJ|1|13|G|529
6GSJ|1|13|G|530
6GSJ|1|13|U|531
6GSJ|1|13|A|532
6GSJ|1|13|A|533
6GSJ|1|13|U|534
6GSJ|1|13|A|535
6GSJ|1|13|C|536
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 1K
- Transfer RNA; tRNA
- Chain 2E
- 30S ribosomal protein S3
- Chain 3E
- 30S ribosomal protein S4
- Chain 3I
- 30S ribosomal protein S12
- Chain 4K
- RNA (27-MER)
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