IL_6GSJ_047

3D structure

PDB id

6GSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CAGC*GG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSJ_047 not in the Motif Atlas

Homologous match to IL_4LFB_049

Geometric discrepancy: 0.513

The information below is about IL_4LFB_049

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_87975.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

10

Unit IDs

6GSJ|1|13|C|1129
6GSJ|1|13|A|1130
6GSJ|1|13|G|1131
6GSJ|1|13|C|1132
*
6GSJ|1|13|G|1142
6GSJ|1|13|G|1143

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 8E

30S ribosomal protein S9