IL_6GSJ_132
3D structure
- PDB id
- 6GSJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.96 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 6GSJ|1|14|A|1938, 6GSJ|1|14|U|1944, 6GSJ|1|14|U|1963
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GSJ_132 not in the Motif Atlas
- Geometric match to IL_4WF9_077
- Geometric discrepancy: 0.1285
- The information below is about IL_4WF9_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42218.2
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-L-R-L
- Number of instances in this motif group
- 5
Unit IDs
6GSJ|1|14|C|1934
6GSJ|1|14|G|1935
6GSJ|1|14|A|1936
6GSJ|1|14|A|1937
6GSJ|1|14|A|1938
6GSJ|1|14|U|1939
6GSJ|1|14|U|1940
6GSJ|1|14|C|1941
6GSJ|1|14|C|1942
6GSJ|1|14|U|1943
6GSJ|1|14|U|1944
6GSJ|1|14|G|1945
*
6GSJ|1|14|C|1961
6GSJ|1|14|C|1962
6GSJ|1|14|U|1963
6GSJ|1|14|G|1964
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 19
- 50S ribosomal protein L2
- Chain 1G
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1L
- Transfer RNA; tRNA
Coloring options: