3D structure

PDB id
6GSK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.36 Å

Loop

Sequence
GCAAUG*UGAC
Length
10 nucleotides
Bulged bases
6GSK|1|13|G|388
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6GSK_016 not in the Motif Atlas
Geometric match to IL_4V88_408
Geometric discrepancy: 0.2328
The information below is about IL_4V88_408
Detailed Annotation
C-loop with extra cWW pair
Broad Annotation
C-loop
Motif group
IL_11347.2
Basepair signature
cWW-cWW-L-cWW-L
Number of instances in this motif group
3

Unit IDs

6GSK|1|13|G|371
6GSK|1|13|C|372
6GSK|1|13|A|373
6GSK|1|13|A|374
6GSK|1|13|U|375
6GSK|1|13|G|376
*
6GSK|1|13|U|387
6GSK|1|13|G|388
6GSK|1|13|A|389
6GSK|1|13|C|390

Current chains

Chain 13
16S ribosomal RNA

Nearby chains

Chain 7I
30S ribosomal protein S16

Coloring options:


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