IL_6GSK_050

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_050 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1283

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6GSK|1|13|C|1303
6GSK|1|13|G|1304
6GSK|1|13|G|1305
6GSK|1|13|A|1306
6GSK|1|13|U|1307
6GSK|1|13|U|1308
*
6GSK|1|13|A|1329
6GSK|1|13|U|1330
6GSK|1|13|G|1331
6GSK|1|13|A|1332
6GSK|1|13|A|1333
6GSK|1|13|G|1334

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 1F

30S ribosomal protein Thx

Chain 4I

30S ribosomal protein S13