IL_6GSK_103

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GCAAUG*CAGC

Length

10 nucleotides

Bulged bases

6GSK|1|14|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_103 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.3756

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6GSK|1|14|G|1319
6GSK|1|14|C|1320
6GSK|1|14|A|1321
6GSK|1|14|A|1322
6GSK|1|14|U|1323
6GSK|1|14|G|1324
*
6GSK|1|14|C|1330
6GSK|1|14|A|1331
6GSK|1|14|G|1332
6GSK|1|14|C|1333

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain A5

50S ribosomal protein L22

Chain B5

50S ribosomal protein L23