IL_6GSK_186
3D structure
- PDB id
- 6GSK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.36 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 6GSK|1|1G|A|532, 6GSK|1|1G|U|534, 6GSK|1|1G|A|535
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GSK_186 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1864
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6GSK|1|1G|G|515
6GSK|1|1G|U|516
6GSK|1|1G|G|517
6GSK|1|1G|C|518
6GSK|1|1G|C|519
6GSK|1|1G|A|520
6GSK|1|1G|G|521
*
6GSK|1|1G|C|528
6GSK|1|1G|G|529
6GSK|1|1G|G|530
6GSK|1|1G|U|531
6GSK|1|1G|A|532
6GSK|1|1G|A|533
6GSK|1|1G|U|534
6GSK|1|1G|A|535
6GSK|1|1G|C|536
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 1L
- Transfer RNA; tRNA
- Chain 22
- 30S ribosomal protein S3
- Chain 32
- 30S ribosomal protein S4
- Chain 3A
- 30S ribosomal protein S12
- Chain 4L
- mRNA
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