IL_6GSK_304

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

UGGUC*GGCUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_304 not in the Motif Atlas

Homologous match to IL_4WF9_084

Geometric discrepancy: 0.5215

The information below is about IL_4WF9_084

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6GSK|1|1H|U|2099
6GSK|1|1H|G|2100
6GSK|1|1H|G|2101
6GSK|1|1H|U|2102
6GSK|1|1H|C|2103
*
6GSK|1|1H|G|2186
6GSK|1|1H|G|2187
6GSK|1|1H|C|2188
6GSK|1|1H|U|2189
6GSK|1|1H|G|2190

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains