IL_6GSM_020
3D structure
- PDB id
- 6GSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in open conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.15 Å
Loop
- Sequence
- UAUCAA*UUUCAACG
- Length
- 14 nucleotides
- Bulged bases
- 6GSM|1|2|U|312, 6GSM|1|2|C|350
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GSM_020 not in the Motif Atlas
- Homologous match to IL_4V88_402
- Geometric discrepancy: 0.1483
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
6GSM|1|2|U|310
6GSM|1|2|A|311
6GSM|1|2|U|312
6GSM|1|2|C|313
6GSM|1|2|A|314
6GSM|1|2|A|315
*
6GSM|1|2|U|347
6GSM|1|2|U|348
6GSM|1|2|U|349
6GSM|1|2|C|350
6GSM|1|2|A|351
6GSM|1|2|A|352
6GSM|1|2|C|353
6GSM|1|2|G|354
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain I
- 40S ribosomal protein S8
- Chain L
- KLLA0A10483p
- Chain X
- RPS23
- Chain q
- Eukaryotic translation initiation factor 3 subunit C
Coloring options: