IL_6GSM_035
3D structure
- PDB id
- 6GSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in open conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.15 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GSM_035 not in the Motif Atlas
- Homologous match to IL_4V88_418
- Geometric discrepancy: 0.1616
- The information below is about IL_4V88_418
- Detailed Annotation
- tSH-tWH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
6GSM|1|2|C|626
6GSM|1|2|G|627
6GSM|1|2|U|628
6GSM|1|2|A|629
6GSM|1|2|G|630
*
6GSM|1|2|U|967
6GSM|1|2|C|968
6GSM|1|2|A|969
6GSM|1|2|A|970
6GSM|1|2|G|971
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain L
- KLLA0A10483p
- Chain N
- KLLA0F18040p
- Chain W
- 40S ribosomal protein S22
- Chain X
- RPS23
- Chain q
- Eukaryotic translation initiation factor 3 subunit C
Coloring options: