IL_6GSM_054
3D structure
- PDB id
- 6GSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in open conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.15 Å
Loop
- Sequence
- ACCAC*GUCCCU
- Length
- 11 nucleotides
- Bulged bases
- 6GSM|1|2|C|1158
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GSM_054 not in the Motif Atlas
- Geometric match to IL_5TBW_062
- Geometric discrepancy: 0.3761
- The information below is about IL_5TBW_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_51005.1
- Basepair signature
- cWW-L-R-tWH-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
6GSM|1|2|A|1156
6GSM|1|2|C|1157
6GSM|1|2|C|1158
6GSM|1|2|A|1159
6GSM|1|2|C|1160
*
6GSM|1|2|G|1614
6GSM|1|2|U|1615
6GSM|1|2|C|1616
6GSM|1|2|C|1617
6GSM|1|2|C|1618
6GSM|1|2|U|1619
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Transfer RNA; tRNA
- Chain F
- KLLA0D10659p
- Chain Q
- 40S ribosomal protein S16
- Chain U
- KLLA0F25542p
- Chain c
- 40S ribosomal protein S28
- Chain j
- Eukaryotic translation initiation factor 2 subunit alpha
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