IL_6GSM_070
3D structure
- PDB id
- 6GSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in open conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.15 Å
Loop
- Sequence
- GUACAAC*GUAAUC
- Length
- 13 nucleotides
- Bulged bases
- 6GSM|1|2|A|1491, 6GSM|1|2|A|1514
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GSM_070 not in the Motif Atlas
- Geometric match to IL_5J7L_055
- Geometric discrepancy: 0.3262
- The information below is about IL_5J7L_055
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.2
- Basepair signature
- cWW-cSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6GSM|1|2|G|1486
6GSM|1|2|U|1487
6GSM|1|2|A|1488
6GSM|1|2|C|1489
6GSM|1|2|A|1490
6GSM|1|2|A|1491
6GSM|1|2|C|1492
*
6GSM|1|2|G|1511
6GSM|1|2|U|1512
6GSM|1|2|A|1513
6GSM|1|2|A|1514
6GSM|1|2|U|1515
6GSM|1|2|C|1516
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain D
- KLLA0D08305p
- Chain K
- KLLA0B08173p
- Chain U
- KLLA0F25542p
- Chain d
- 40S ribosomal protein S29
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